trackpy.annotate3d¶

trackpy.annotate3d(centroids, image, **kwargs)¶

Annotates a 3D image and returns a scrollable stack for display in IPython.

Parameters:

centroidsDataFrame including columns x and y
imageimage array (or string path to image file)
circle_sizeDeprecated.: This will be removed in a future version of trackpy. Use plot_style={‘markersize’: …} instead.
colorsingle matplotlib color or a list of multiple colors: default None
invertIf you give a filepath as the image, specify whether to invert: black and white. Default True.
axmatplotlib axes object, defaults to current axes
split_categorystring, parameter to use to split the data into sections: default None
split_threshsingle value or list of ints or floats to split: particles into sections for plotting in multiple colors. List items should be ordered by increasing value. default None
imshow_styledictionary of keyword arguments passed through to: the Axes.imshow(…) command the displays the image
plot_styledictionary of keyword arguments passed through to: the Axes.plot(…) command that marks the features

Returns: