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trackpy 0.7rc1

  • Introduction to Trackpy
  • Installing Trackpy
    • API reference
    • What’s new in the package
    • Walkthrough
    • Prediction (Linking)
    • Tracking in 3D
    • Uncertainty Estimation
    • Advanced Linking
    • Adaptive Linking
    • Streaming
    • Performance
    • Parallelized Feature Finding
    • Tracking Large Features Such As Bubbles
    • Tracking Particles' Rings in Bright-Field Microscopy
  • Introduction to Trackpy
  • Installing Trackpy
  • API reference
  • What’s new in the package
  • Walkthrough
  • Prediction (Linking)
  • Tracking in 3D
  • Uncertainty Estimation
  • Advanced Linking
  • Adaptive Linking
  • Streaming
  • Performance
  • Parallelized Feature Finding
  • Tracking Large Features Such As Bubbles
  • Tracking Particles' Rings in Bright-Field Microscopy

Section Navigation

  • trackpy.locate
  • trackpy.batch
  • trackpy.link
  • trackpy.grey_dilation
  • trackpy.find_link
  • trackpy.refine_com
  • trackpy.refine_leastsq
  • trackpy.link
  • trackpy.link_iter
  • trackpy.link_df_iter
  • trackpy.link_partial
  • trackpy.reconnect_traj_patch
  • trackpy.static.proximity
  • trackpy.static.pair_correlation_2d
  • trackpy.static.pair_correlation_3d
  • trackpy.static.cluster
  • trackpy.motion.msd
  • trackpy.motion.imsd
  • trackpy.motion.emsd
  • trackpy.motion.compute_drift
  • trackpy.motion.subtract_drift
  • trackpy.motion.vanhove
  • trackpy.motion.relate_frames
  • trackpy.motion.velocity_corr
  • trackpy.motion.direction_corr
  • trackpy.motion.is_typical
  • trackpy.motion.diagonal_size
  • trackpy.motion.theta_entropy
  • trackpy.motion.min_rolling_theta_entropy
  • trackpy.filtering.filter_stubs
  • trackpy.filtering.filter_clusters
  • trackpy.predict.NullPredict
  • trackpy.predict.ChannelPredict
  • trackpy.predict.DriftPredict
  • trackpy.predict.NearestVelocityPredict
  • trackpy.predict.predictor
  • trackpy.predict.instrumented
  • trackpy.annotate
  • trackpy.scatter
  • trackpy.plot_traj
  • trackpy.annotate3d
  • trackpy.scatter3d
  • trackpy.plot_traj3d
  • trackpy.plot_displacements
  • trackpy.subpx_bias
  • trackpy.plot_density_profile
  • trackpy.mass_ecc
  • trackpy.mass_size
  • trackpy.find.percentile_threshold
  • trackpy.preprocessing.bandpass
  • trackpy.preprocessing.lowpass
  • trackpy.preprocessing.scale_to_gamut
  • trackpy.preprocessing.invert_image
  • trackpy.preprocessing.convert_to_int
  • trackpy.PandasHDFStore
  • trackpy.PandasHDFStoreBig
  • trackpy.PandasHDFStoreSingleNode
  • trackpy.FramewiseData
  • trackpy.quiet
  • trackpy.handle_logging
  • trackpy.ignore_logging
  • trackpy.minmass_v03_change
  • trackpy.minmass_v04_change
  • trackpy.utils.fit_powerlaw
  • trackpy.diag.performance_report
  • trackpy.diag.dependencies
  • trackpy.enable_numba
  • trackpy.disable_numba
  • trackpy.link_iter
  • trackpy.link
  • trackpy.SubnetOversizeException
  • trackpy.masks.binary_mask
  • trackpy.masks.r_squared_mask
  • trackpy.masks.x_squared_masks
  • trackpy.masks.cosmask
  • trackpy.masks.sinmask
  • trackpy.masks.theta_mask
  • trackpy.masks.gaussian_kernel
  • trackpy.masks.mask_image
  • trackpy.masks.slice_image
  • trackpy
    • trackpy.api
    • trackpy.artificial
    • trackpy.diag
    • trackpy.feature
    • trackpy.filtering
    • trackpy.find
    • trackpy.framewise_data
    • trackpy.linking
      • trackpy.linking.find_link
      • trackpy.linking.legacy
      • trackpy.linking.linking
      • trackpy.linking.partial
      • trackpy.linking.subnet
      • trackpy.linking.subnetlinker
      • trackpy.linking.utils
    • trackpy.locate_functions
      • trackpy.locate_functions.brightfield_ring
    • trackpy.masks
    • trackpy.motion
    • trackpy.plots
    • trackpy.predict
    • trackpy.preprocessing
    • trackpy.refine
      • trackpy.refine.brightfield_ring
      • trackpy.refine.center_of_mass
      • trackpy.refine.least_squares
    • trackpy.static
    • trackpy.tracking
    • trackpy.try_numba
    • trackpy.uncertainty
    • trackpy.utils
  • API reference
  • trackpy
  • trackpy.refine

trackpy.refine#

Modules

brightfield_ring

Detect particles in brightfield mode by tracking a ring of dark pixels around a bright interior part.

center_of_mass

least_squares

previous

trackpy.preprocessing

next

trackpy.refine.brightfield_ring

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