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trackpy 0.7rc1

Introduction to Trackpy
Installing Trackpy

Introduction to Trackpy
Installing Trackpy
API reference
What’s new in the package
Walkthrough
Prediction (Linking)
Tracking in 3D
Uncertainty Estimation
Advanced Linking
Adaptive Linking
Streaming
Performance
Parallelized Feature Finding
Tracking Large Features Such As Bubbles
Tracking Particles' Rings in Bright-Field Microscopy

Section Navigation

trackpy.locate
trackpy.batch
trackpy.link

trackpy.grey_dilation
trackpy.find_link

trackpy.refine_com
trackpy.refine_leastsq

trackpy.link
trackpy.link_iter
trackpy.link_df_iter
trackpy.link_partial
trackpy.reconnect_traj_patch

trackpy.static.proximity
trackpy.static.pair_correlation_2d
trackpy.static.pair_correlation_3d
trackpy.static.cluster

trackpy.motion.msd
trackpy.motion.imsd
trackpy.motion.emsd
trackpy.motion.compute_drift
trackpy.motion.subtract_drift
trackpy.motion.vanhove
trackpy.motion.relate_frames
trackpy.motion.velocity_corr
trackpy.motion.direction_corr
trackpy.motion.is_typical
trackpy.motion.diagonal_size
trackpy.motion.theta_entropy
trackpy.motion.min_rolling_theta_entropy
trackpy.filtering.filter_stubs
trackpy.filtering.filter_clusters

trackpy.predict.NullPredict
trackpy.predict.ChannelPredict
trackpy.predict.DriftPredict
trackpy.predict.NearestVelocityPredict
trackpy.predict.predictor
trackpy.predict.instrumented

trackpy.annotate
trackpy.scatter
trackpy.plot_traj
trackpy.annotate3d
trackpy.scatter3d
trackpy.plot_traj3d
trackpy.plot_displacements
trackpy.subpx_bias
trackpy.plot_density_profile

trackpy.mass_ecc
trackpy.mass_size

trackpy.find.percentile_threshold
trackpy.preprocessing.bandpass
trackpy.preprocessing.lowpass
trackpy.preprocessing.scale_to_gamut
trackpy.preprocessing.invert_image
trackpy.preprocessing.convert_to_int

trackpy.PandasHDFStore
trackpy.PandasHDFStoreBig
trackpy.PandasHDFStoreSingleNode
trackpy.FramewiseData

trackpy.quiet
trackpy.handle_logging
trackpy.ignore_logging

trackpy.minmass_v03_change
trackpy.minmass_v04_change
trackpy.utils.fit_powerlaw

trackpy.diag.performance_report
trackpy.diag.dependencies

trackpy.enable_numba
trackpy.disable_numba

trackpy.link_iter
trackpy.link

trackpy.SubnetOversizeException

trackpy.masks.binary_mask
trackpy.masks.r_squared_mask
trackpy.masks.x_squared_masks
trackpy.masks.cosmask
trackpy.masks.sinmask
trackpy.masks.theta_mask
trackpy.masks.gaussian_kernel
trackpy.masks.mask_image
trackpy.masks.slice_image

trackpy

API reference
trackpy.masks.binary_mask

trackpy.masks.binary_mask#

trackpy.masks.binary_mask(radius, ndim)#: Elliptical mask in a rectangular array

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trackpy.SubnetOversizeException

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trackpy.masks.r_squared_mask

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