Index

A

annotate() (in module trackpy)

annotate3d() (in module trackpy)

B

bandpass() (in module trackpy.preprocessing)

batch() (in module trackpy) binary_mask() (in module trackpy.masks)

C

ChannelPredict (class in trackpy.predict) close() (trackpy.FramewiseData method) (trackpy.PandasHDFStore method) (trackpy.PandasHDFStoreBig method) (trackpy.PandasHDFStoreSingleNode method)

cluster() (in module trackpy.static) compute_drift() (in module trackpy.motion) convert_to_int() (in module trackpy.preprocessing) cosmask() (in module trackpy.masks)

D

dependencies() (in module trackpy.diag) diagonal_size() (in module trackpy.motion) direction_corr() (in module trackpy.motion) disable_numba() (in module trackpy)

DriftPredict (class in trackpy.predict) dump() (trackpy.FramewiseData method) (trackpy.PandasHDFStore method) (trackpy.PandasHDFStoreBig method) (trackpy.PandasHDFStoreSingleNode method)

E

emsd() (in module trackpy.motion)

enable_numba() (in module trackpy)

F

filter_clusters() (in module trackpy.filtering) filter_stubs() (in module trackpy.filtering) find_link() (in module trackpy) (in module trackpy.linking) fit_powerlaw() (in module trackpy.utils)

frames (trackpy.FramewiseData property) (trackpy.PandasHDFStore property) (trackpy.PandasHDFStoreBig property) (trackpy.PandasHDFStoreSingleNode property) FramewiseData (class in trackpy)

G

gaussian_kernel() (in module trackpy.masks) get() (trackpy.FramewiseData method) (trackpy.PandasHDFStore method) (trackpy.PandasHDFStoreBig method) (trackpy.PandasHDFStoreSingleNode method)

grey_dilation() (in module trackpy)

H

handle_logging() (in module trackpy)

I

ignore_logging() (in module trackpy) imsd() (in module trackpy.motion)

instrumented() (in module trackpy.predict) invert_image() (in module trackpy.preprocessing) is_typical() (in module trackpy.motion)

L

link() (in module trackpy) link_df() (trackpy.predict.ChannelPredict method) (trackpy.predict.DriftPredict method) (trackpy.predict.NearestVelocityPredict method) (trackpy.predict.NullPredict method) link_df_iter() (in module trackpy) (trackpy.predict.ChannelPredict method) (trackpy.predict.DriftPredict method) (trackpy.predict.NearestVelocityPredict method) (trackpy.predict.NullPredict method)

link_iter() (in module trackpy) link_partial() (in module trackpy) locate() (in module trackpy) lowpass() (in module trackpy.preprocessing)

M

mask_image() (in module trackpy.masks) mass_ecc() (in module trackpy) mass_size() (in module trackpy) max_frame (trackpy.FramewiseData property) (trackpy.PandasHDFStore property) (trackpy.PandasHDFStoreBig property) (trackpy.PandasHDFStoreSingleNode property) min_rolling_theta_entropy() (in module trackpy.motion) minmass_v03_change() (in module trackpy) minmass_v04_change() (in module trackpy) module trackpy trackpy.api trackpy.artificial trackpy.diag trackpy.feature trackpy.filtering trackpy.find trackpy.framewise_data trackpy.linking trackpy.linking.legacy trackpy.linking.linking trackpy.linking.partial trackpy.linking.subnet trackpy.linking.subnetlinker trackpy.linking.utils trackpy.locate_functions trackpy.locate_functions.brightfield_ring trackpy.masks trackpy.motion trackpy.plots trackpy.predict trackpy.preprocessing trackpy.refine trackpy.refine.brightfield_ring trackpy.refine.center_of_mass trackpy.refine.least_squares trackpy.static trackpy.tracking trackpy.try_numba trackpy.uncertainty trackpy.utils

msd() (in module trackpy.motion)

N

NearestVelocityPredict (class in trackpy.predict)

NullPredict (class in trackpy.predict)

O

observe() (trackpy.predict.ChannelPredict method) (trackpy.predict.DriftPredict method) (trackpy.predict.NearestVelocityPredict method) (trackpy.predict.NullPredict method)

P

pair_correlation_2d() (in module trackpy.static) pair_correlation_3d() (in module trackpy.static) PandasHDFStore (class in trackpy) PandasHDFStoreBig (class in trackpy) PandasHDFStoreSingleNode (class in trackpy) percentile_threshold() (in module trackpy.find) performance_report() (in module trackpy.diag) plot_density_profile() (in module trackpy) plot_displacements() (in module trackpy) plot_traj() (in module trackpy)

plot_traj3d() (in module trackpy) predict() (trackpy.predict.ChannelPredict method) (trackpy.predict.DriftPredict method) (trackpy.predict.NearestVelocityPredict method) (trackpy.predict.NullPredict method) predictor() (in module trackpy.predict) proximity() (in module trackpy.static) put() (trackpy.FramewiseData method) (trackpy.PandasHDFStore method) (trackpy.PandasHDFStoreBig method) (trackpy.PandasHDFStoreSingleNode method)

Q

quiet() (in module trackpy)

R

r_squared_mask() (in module trackpy.masks) rebuild_cache() (trackpy.PandasHDFStoreBig method) reconnect_traj_patch() (in module trackpy)

refine_com() (in module trackpy) refine_leastsq() (in module trackpy) relate_frames() (in module trackpy.motion)

S

scale_to_gamut() (in module trackpy.preprocessing) scatter() (in module trackpy) scatter3d() (in module trackpy) sinmask() (in module trackpy.masks) slice_image() (in module trackpy.masks) state() (trackpy.predict.ChannelPredict method) (trackpy.predict.DriftPredict method) (trackpy.predict.NearestVelocityPredict method) (trackpy.predict.NullPredict method)

SubnetOversizeException subpx_bias() (in module trackpy) subtract_drift() (in module trackpy.motion)

T

t_column (trackpy.FramewiseData property) (trackpy.PandasHDFStore property) (trackpy.PandasHDFStoreBig property) (trackpy.PandasHDFStoreSingleNode property) theta_entropy() (in module trackpy.motion) theta_mask() (in module trackpy.masks) trackpy module trackpy.api module trackpy.artificial module trackpy.diag module trackpy.feature module trackpy.filtering module trackpy.find module trackpy.framewise_data module trackpy.linking module trackpy.linking.legacy module trackpy.linking.linking module trackpy.linking.partial module trackpy.linking.subnet module trackpy.linking.subnetlinker module

trackpy.linking.utils module trackpy.locate_functions module trackpy.locate_functions.brightfield_ring module trackpy.masks module trackpy.motion module trackpy.plots module trackpy.predict module trackpy.preprocessing module trackpy.refine module trackpy.refine.brightfield_ring module trackpy.refine.center_of_mass module trackpy.refine.least_squares module trackpy.static module trackpy.tracking module trackpy.try_numba module trackpy.uncertainty module trackpy.utils module

V

vanhove() (in module trackpy.motion)

velocity_corr() (in module trackpy.motion)

W

wrap() (trackpy.predict.ChannelPredict method) (trackpy.predict.DriftPredict method) (trackpy.predict.NearestVelocityPredict method) (trackpy.predict.NullPredict method)

wrap_single() (trackpy.predict.ChannelPredict method) (trackpy.predict.DriftPredict method) (trackpy.predict.NearestVelocityPredict method) (trackpy.predict.NullPredict method)

X

x_squared_masks() (in module trackpy.masks)